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aurora_cluster:running_on_aurora [2016/12/06 11:19]
florido [Interactive access to nodes for code testing]
aurora_cluster:running_on_aurora [2017/02/15 11:53] (current)
florido [Singularity]
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 There'​s only few important things one needs to know: There'​s only few important things one needs to know:
  
-  ​* HEP nodes are running in a special **partition** (a.k.a. queue) called ''​hep''​. Whenever in the documentation you're asked to specify a queue, use ''​hep''​ +  * A set of nodes is selected by choosing ​a **partition**, ​a **project** and a **reservation**,​ one for each division. The HEP nodes do not require a special reservation flag to be accessed. The partitions, ​project names and reservation flags are listed in the table below:
-  ​* A set of nodes is selected by choosing a **project** and a **reservation**,​ one for each division. The HEP nodes do not require a special reservation flag to be accessed. The project names and reservation flags are listed in the table below:+
  
 ^ Your division ^ SLURM Partition ^ Project String ^ Reservation String ^ call srun with ^ ^ Your division ^ SLURM Partition ^ Project String ^ Reservation String ^ call srun with ^
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 ===== Batch Scripts Examples ===== ===== Batch Scripts Examples =====
  
-==== hep partition ====+==== hep partition ​(Nuclear, Particle and Theoretical Phyisics) ​====
  
 A typical direct submission to ''​hep''​ nodes looks like: A typical direct submission to ''​hep''​ nodes looks like:
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 The results will be found in the folder where the above command is ran, in a file named after the slurm job ID. The results will be found in the folder where the above command is ran, in a file named after the slurm job ID.
  
-==== lu partition ====+==== lu partition ​(Mathematical Physics) ​====
  
 A typical direct submission to ''​lu''​ nodes looks like: A typical direct submission to ''​lu''​ nodes looks like:
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 <code bash> <code bash>
-interactive -t 00:60:00 -p hep -A HEP2016-1-1+interactive -t 00:60:00 -p hep -A HEP2016-1-4
 </​code>​ </​code>​
 <code bash> <code bash>
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 ==== Singularity ==== ==== Singularity ====
  
-To be documented+The old singularity version (1.0) is going to being removed on week 8, year 2017 
 +because of a security issue. Please update your scripts to enable singularity using these commands: 
 + 
 +<​code:​bash>​ 
 +module load GCC/​4.9.3-2.25 
 +module load Singularity/​2.2.1 
 +</​code>​ 
 + 
 +It is recommended to **always use the version number** when loading the 
 +module to prevent issues using different versions. If you don’t use that 
 +and the default module changes, you will run an unwanted version. 
 +  
  
 ===== Custom software ===== ===== Custom software =====
aurora_cluster/running_on_aurora.1481019547.txt.gz · Last modified: 2016/12/06 11:19 by florido