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aurora_cluster:running_on_aurora [2016/12/06 10:19] florido [Interactive access to nodes for code testing] |
aurora_cluster:running_on_aurora [2017/02/15 10:53] florido [Singularity] |
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There's only few important things one needs to know: | There's only few important things one needs to know: | ||
- | * HEP nodes are running in a special **partition** (a.k.a. queue) called ''hep''. Whenever in the documentation you're asked to specify a queue, use ''hep'' | + | * A set of nodes is selected by choosing a **partition**, a **project** and a **reservation**, one for each division. The HEP nodes do not require a special reservation flag to be accessed. The partitions, project names and reservation flags are listed in the table below: |
- | * A set of nodes is selected by choosing a **project** and a **reservation**, one for each division. The HEP nodes do not require a special reservation flag to be accessed. The project names and reservation flags are listed in the table below: | + | |
^ Your division ^ SLURM Partition ^ Project String ^ Reservation String ^ call srun with ^ | ^ Your division ^ SLURM Partition ^ Project String ^ Reservation String ^ call srun with ^ | ||
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===== Batch Scripts Examples ===== | ===== Batch Scripts Examples ===== | ||
- | ==== hep partition ==== | + | ==== hep partition (Nuclear, Particle and Theoretical Phyisics) ==== |
A typical direct submission to ''hep'' nodes looks like: | A typical direct submission to ''hep'' nodes looks like: | ||
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The results will be found in the folder where the above command is ran, in a file named after the slurm job ID. | The results will be found in the folder where the above command is ran, in a file named after the slurm job ID. | ||
- | ==== lu partition ==== | + | ==== lu partition (Mathematical Physics) ==== |
A typical direct submission to ''lu'' nodes looks like: | A typical direct submission to ''lu'' nodes looks like: | ||
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<code bash> | <code bash> | ||
- | interactive -t 00:60:00 -p hep -A HEP2016-1-1 | + | interactive -t 00:60:00 -p hep -A HEP2016-1-4 |
</code> | </code> | ||
<code bash> | <code bash> | ||
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==== Singularity ==== | ==== Singularity ==== | ||
- | To be documented | + | The old singularity version (1.0) is going to being removed on week 8, year 2017 |
+ | because of a security issue. Please update your scripts to enable singularity using these commands: | ||
+ | |||
+ | <code:bash> | ||
+ | module load GCC/4.9.3-2.25 | ||
+ | module load Singularity/2.2.1 | ||
+ | </code> | ||
+ | |||
+ | It is recommended to **always use the version number** when loading the | ||
+ | module to prevent issues using different versions. If you don’t use that | ||
+ | and the default module changes, you will run an unwanted version. | ||
+ | |||
===== Custom software ===== | ===== Custom software ===== |