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aurora_cluster:running_on_aurora [2016/12/06 11:17] florido |
aurora_cluster:running_on_aurora [2018/09/27 12:41] florido |
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There's only few important things one needs to know: | There's only few important things one needs to know: | ||
- | * A set of nodes is selected by choosing a **project** and a **reservation**, one for each division. The HEP nodes do not require a special reservation flag to be accessed. The project names and reservation flags are listed in the table below: | + | * A set of nodes is selected by choosing a **partition**, a **project** and a **reservation**, one for each division. The HEP nodes do not require a special reservation flag to be accessed. The partitions, project names and reservation flags are listed in the table below: |
- | ^ Your division ^ SLURM Partition ^ Project String ^ Reservation String ^ call srun with ^ | + | ^ Your division ^ SLURM Partition ^ Project String ^ Reservation String ^ call srun/sbatch with ^ Nodes ^ |
- | | Nuclear Physics | ''hep'' | ''HEP2016-1-3'' | not needed | <code:bash>srun -p hep -A HEP2016-1-3 <scriptname></code> | | + | | Nuclear Physics | ''hep'' | ''HEP2016-1-3'' | not needed | <code:bash>srun -p hep -A HEP2016-1-3 <scriptname></code> | ''au[193-216]'' | |
- | | Particle Physics | ''hep'' | ''HEP2016-1-4'' | not needed | <code:bash>srun -p hep -A HEP2016-1-4 <scriptname></code> | | + | | Particle Physics | ''hep'' | ''HEP2016-1-4'' | not needed | <code:bash>srun -p hep -A HEP2016-1-4 <scriptname></code> | ::: | |
- | | Theoretical Physics | ''hep'' | ''HEP2016-1-5'' | not needed | <code:bash>srun -p hep -A HEP2016-1-5 <scriptname> </code> | | + | | Theoretical Physics | ''hep'' | ''HEP2016-1-5'' | not needed | <code:bash>srun -p hep -A HEP2016-1-5 <scriptname> </code> | ::: | |
- | | Mathematical Physics | ''lu'' | ''lu2016-2-10'' | ''lu2016-2-10'' | <code:bash>srun -p lu -A lu2016-2-10 --reservation=lu2016-2-10 <scriptname> </code> | | + | | Mathematical Physics | ''lu'' | ''lu2016-2-10'' | ''lu2016-2-10'' | <code:bash>srun -p lu -A lu2016-2-10 --reservation=lu2016-2-10 <scriptname> </code> | ''mn[01-10],mn[15-20]'' | |
+ | | Mathematical Physics, **select only skylake machines** | ''lu'' | ''lu2016-2-10'' | ''lu2016-2-10'' | <code:bash>srun -C skylake -p lu -A lu2016-2-10 --reservation=lu2016-2-10 <scriptname> </code> | ''mn15-20'' | | ||
* Home folders are backed up by Lunarc. | * Home folders are backed up by Lunarc. | ||
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==== Singularity ==== | ==== Singularity ==== | ||
- | To be documented | + | The old singularity version (1.0) is going to being removed on week 8, year 2017 |
+ | because of a security issue. Please update your scripts to enable singularity using these commands: | ||
+ | |||
+ | <code:bash> | ||
+ | module load GCC/4.9.3-2.25 | ||
+ | module load Singularity/2.2.1 | ||
+ | </code> | ||
+ | |||
+ | It is recommended to **always use the version number** when loading the | ||
+ | module to prevent issues using different versions. If you don’t use that | ||
+ | and the default module changes, you will run an unwanted version. | ||
+ | |||
===== Custom software ===== | ===== Custom software ===== |